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AT1G79060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVMWeggNOG:ENOG410Y9HKEMBL:AC002986EMBL:AK228755
EMBL:BT014896EMBL:BT015023EMBL:CP002684EnsemblPlants:AT1G79060
EnsemblPlants:AT1G79060.1entrez:844247GeneID:844247Gramene:AT1G79060.1
hmmpanther:PTHR31722hmmpanther:PTHR31722:SF0HOGENOM:HOG000238814KEGG:ath:AT1G79060
OMA:PNPPRMRPhylomeDB:O64545PIR:T01049Proteomes:UP000006548
RefSeq:NP_178027.1TAIR:AT1G79060UniGene:At.34186UniProt:O64545
Coordinates (TAIR10) chr1:+:29741873..29743063
Molecular Weight (calculated) 42509.10 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.68
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVCVNNVT VSQDFPTYGC FNPRASFSRD DGGRSSGSVA SEIPKEETAV GAGDFEFRLE EDPVGMLPAD ELFSDGKLVT KQQQQQTTEI GGKCRRMEVV
101: EIEISGGGDN CSFSPKAPRC SSRWRDLLGL KRFSQNSSKS ASTATTTTTN PRSSTSSLKQ FLHRSSRSSS SSSDASLLMS LPLLKDSDSE SVSISSSRMS
201: LSSSSSGHDH EDLPRLSLDA ERPNQNHIIN LNHNLTANPF APARSLNPNP PRMRLVNHST SGTGGGRVGR SPMRRSGGET SAIMNRGVSV DSPRLNSSGK
301: IVFQNLERSS SSPSSFNGGT SGYRHRGMER SYSSNVRVTP VLNVPVCSIR GGSVVFGQFF SSSSSSSSSQ NNRTGNNNNN RASCHISRGR NSTDRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)