AT3G63290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G13400.1); Has 166 Blast hits to 166 proteins in 65 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 62; Plants - 68; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23381713..23383059 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45887.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETEILEPY QLSFSDLLLS SRNRSQWISK NVMDALGPTG PGLLCITGVL GSAFLRRKLL PMARKLALLD PDKRKLILME HHLGSDVPLK NPERDVSSFA 101: MQLNYERTTY KSSLGKLWFD EAGSKLDLQE DDDDAFTNLG GAFKELGFCM RELGLSIARL CDREIGGGLL EESLLDSCTA KGRLIHYHSA ADKYALRESQ 201: RRNQSGNRVS SKRRVQNAAE QELNRRNGAG LSGSHFNLWQ QWHYDYGIFT VLTDPMFLSP YSYQEFSLMS SHSYLQIYHP SKNKFYMVKT PQDSFLVQIG 301: ESADILSKGK LRSTLHCVCK PEKLDHVSRE TFVVFLHPKW SQTFSVSEYT MEHLRSDEVV PRPDLQNIVP PLSSRLRDGM TFAEFSRETT KQYYGGNGLQ 401: SNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)