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AT5G25620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.818
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2361-MONOMERBRENDA:1.14.13.168EC:1.14.13.168eggNOG:COG2072
eggNOG:KOG1399EMBL:AC006601EMBL:AY065229EMBL:AY113851
EMBL:CP002688EnsemblPlants:AT5G25620EnsemblPlants:AT5G25620.1entrez:832638
ExpressionAtlas:Q8VZ59Gene3D:3.50.50.60GeneID:832638Genevisible:Q8VZ59
GO:GO:0004499GO:GO:0005737GO:GO:0009851GO:GO:0050660
GO:GO:0050661hmmpanther:PTHR23023hmmpanther:PTHR23023:SF37HOGENOM:HOG000240759
InParanoid:Q8VZ59InterPro:IPR000103InterPro:IPR016040InterPro:IPR020946
InterPro:IPR023753iPTMnet:Q8VZ59PaxDb:Q8VZ59Pfam:PF00743
Pfam:Q8VZ59PhylomeDB:Q8VZ59PRIDE:Q8VZ59PRINTS:PR00469
PRO:PR:Q8VZ59ProteinModelPortal:Q8VZ59Proteomes:UP000006548RefSeq:NP_197944.2
SMR:Q8VZ59STRING:3702.AT5G25620.2SUPFAM:SSF51735SUPFAM:SSF51905
TAIR:AT5G25620tair10-symbols:YUC6UniGene:At.28557UniPathway:UPA00151
UniProt:Q8VZ59
Coordinates (TAIR10) chr5:-:8935520..8938224
Molecular Weight (calculated) 46640.80 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.16
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFCWKREME GKLAHDHRGM TSPRRICVVT GPVIVGAGPS GLATAACLKE RGITSVLLER SNCIASLWQL KTYDRLHLHL PKQFCELPII PFPGDFPTYP
101: TKQQFIEYLE DYARRFDIKP EFNQTVESAA FDENLGMWRV TSVGEEGTTE YVCRWLVAAT GENAEPVVPR FEGMDKFAAA GVVKHTCHYK TGGDFAGKRV
201: LVVGCGNSGM EVCLDLCNFG AQPSLVVRDA VHVLPREMLG TSTFGLSMFL LKWLPIRLVD RFLLVVSRFI LGDTTLLGLN RPRLGPLELK NISGKTPVLD
301: VGTLAKIKTG DIKVCSGIRR LKRHEVEFDN GKTERFDAII LATGYKSNVP SWLKENKMFS KKDGFPIQEF PEGWRGECGL YAVGFTKRGI SGASMDAKRI
401: AEDIHKCWKQ DEQVKKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)