AT5G25620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.818 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Flavin-binding monooxygenase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:8935520..8938224 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46640.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 417 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDFCWKREME GKLAHDHRGM TSPRRICVVT GPVIVGAGPS GLATAACLKE RGITSVLLER SNCIASLWQL KTYDRLHLHL PKQFCELPII PFPGDFPTYP 101: TKQQFIEYLE DYARRFDIKP EFNQTVESAA FDENLGMWRV TSVGEEGTTE YVCRWLVAAT GENAEPVVPR FEGMDKFAAA GVVKHTCHYK TGGDFAGKRV 201: LVVGCGNSGM EVCLDLCNFG AQPSLVVRDA VHVLPREMLG TSTFGLSMFL LKWLPIRLVD RFLLVVSRFI LGDTTLLGLN RPRLGPLELK NISGKTPVLD 301: VGTLAKIKTG DIKVCSGIRR LKRHEVEFDN GKTERFDAII LATGYKSNVP SWLKENKMFS KKDGFPIQEF PEGWRGECGL YAVGFTKRGI SGASMDAKRI 401: AEDIHKCWKQ DEQVKKI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)