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AT3G20015.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 3754 Blast hits to 3736 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1064; Fungi - 524; Plants - 1996; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20015-MONOMEREC:3.4.23.-eggNOG:ENOG410XNV7eggNOG:KOG1339
EMBL:AP000383EMBL:AP002050EMBL:BT003814EMBL:CP002686
EnsemblPlants:AT3G20015EnsemblPlants:AT3G20015.1entrez:821540Gene3D:2.40.70.10
GeneID:821540Genevisible:Q9LHE3GO:GO:0003677GO:GO:0004190
Gramene:AT3G20015.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF265HOGENOM:HOG000237482
InParanoid:Q9LHE3InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799
InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT3G20015MEROPS:A01.A10
OMA:SRGTDSTPANTHER:PTHR13683PaxDb:Q9LHE3Pfam:PF14541
Pfam:PF14543Pfam:Q9LHE3Pfscan:PS51767PhylomeDB:Q9LHE3
PRIDE:Q9LHE3PRO:PR:Q9LHE3PROSITE:PS00141PROSITE:PS51767
ProteinModelPortal:Q9LHE3Proteomes:UP000006548RefSeq:NP_188636.2SMR:Q9LHE3
STRING:3702.AT3G20015.1SUPFAM:SSF50630TAIR:AT3G20015UniGene:At.22603
UniProt:Q9LHE3
Coordinates (TAIR10) chr3:-:6978746..6980158
Molecular Weight (calculated) 50548.10 Da
IEP (calculated) 7.24
GRAVY (calculated) 0.01
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLPLFFFFL HLHLHLSSSS SISFPDFQII DVLQPPLTVT ATLPDFNNTH FSDESSSKYT LRLLHRDRFP SVTYRNHHHR LHARMRRDTD RVSAILRRIS
101: GKVIPSSDSR YEVNDFGSDI VSGMDQGSGE YFVRIGVGSP PRDQYMVIDS GSDMVWVQCQ PCKLCYKQSD PVFDPAKSGS YTGVSCGSSV CDRIENSGCH
201: SGGCRYEVMY GDGSYTKGTL ALETLTFAKT VVRNVAMGCG HRNRGMFIGA AGLLGIGGGS MSFVGQLSGQ TGGAFGYCLV SRGTDSTGSL VFGREALPVG
301: ASWVPLVRNP RAPSFYYVGL KGLGVGGVRI PLPDGVFDLT ETGDGGVVMD TGTAVTRLPT AAYVAFRDGF KSQTANLPRA SGVSIFDTCY DLSGFVSVRV
401: PTVSFYFTEG PVLTLPARNF LMPVDDSGTY CFAFAASPTG LSIIGNIQQE GIQVSFDGAN GFVGFGPNVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)