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AT2G45720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G01830.1); Has 2921 Blast hits to 1773 proteins in 216 species: Archae - 2; Bacteria - 19; Metazoa - 422; Fungi - 286; Plants - 1867; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AC003680EMBL:AC004665
EMBL:BT015356EMBL:BT015888EMBL:CP002685EnsemblPlants:AT2G45720
EnsemblPlants:AT2G45720.1EnsemblPlants:AT2G45720.2entrez:819180Gene3D:1.25.10.10
GeneID:819180Gramene:AT2G45720.1Gramene:AT2G45720.2hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF97HOGENOM:HOG000239669InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT2G45720ncoils:CoilOMA:SMSPDIA
Pfam:PF00514Pfscan:PS50176PhylomeDB:O64651PIR:T00885
PROSITE:PS50176Proteomes:UP000006548RefSeq:NP_001031543.1RefSeq:NP_182096.1
SMART:SM00185SMR:O64651STRING:3702.AT2G45720.1SUPFAM:SSF48371
TAIR:AT2G45720UniGene:At.28663UniGene:At.36601UniProt:O64651
Coordinates (TAIR10) chr2:+:18834468..18836129
Molecular Weight (calculated) 59525.80 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.04
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEEKTGNVT LLDQTVEDLL LQAQELVPIA LSKARTVKGF SSRWRVIISR LEKIPTCLSD LSSHPCFSKH TLCKEQLQAV LETLKETIEL ANVCVSEKQE
101: GKLKMQSDLD SLSAKIDLSL KDCGLLMKTG VLGEVTKPLS SSTQDLETFS VRELLARLQI GHLESKRKAL EQLVEVMKED EKAVITALGR TNVASLVQLL
201: TATSPSVREN AVTVICSLAE SGGCENWLIS ENALPSLIRL LESGSIVAKE KAVISLQRMS ISSETSRSIV GHGGVGPLIE ICKTGDSVSQ SASACTLKNI
301: SAVPEVRQNL AEEGIVKVMI NILNCGILLG SKEYAAECLQ NLTSSNETLR RSVISENGIQ TLLAYLDGPL PQESGVAAIR NLVGSVSVET YFKIIPSLVH
401: VLKSGSIGAQ QAAASTICRI ATSNETKRMI GESGCIPLLI RMLEAKASGA REVAAQAIAS LVTVPRNCRE VKRDEKSVTS LVMLLEPSPG NSAKKYAVSG
501: LAALCSSRKC KKLMVSHGAV GYLKKLSELE VPGSKKLLER IEKGKLKSFF SRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)