AT1G60390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : polygalacturonase 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22247611..22249556 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67765.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNIEATLFL CFFCIFSSSN VHFAGAKQTA GNITPSENPF TPKASLIRYW NNHINGDSPK PSFFLSKASP LTAVDSTRFA SLASNHALNT HHSDFCSAAK 101: LFCFPELAAH SLEKHGDDVN FAAYSGKNFT NYGSDRLSGA DSFKNYSGGD NIAVDSFRRY SRNSAGHDDG FTNYAGEVNV ADQSFTTYAT GTTGGSGEFT 201: NYNTDANEPN GRFTSYSDKA NGRSQTFTTY SENGNTGYQS FTSYSKNGNG APNEFSGYGT GSNVVNTGFT KYGESANGAN DSFTSYGENG NVPVNEFKGY 301: GDGGNGAVYG FKNYRDQSNI GVDSFSSYAK NSNNEKVNFV NYGKSFNLGS DNFTGYGQDN VGGNVSFKTY GQGQSFKVYT KDGVVFARYS NNVSSNGKTV 401: NKWVEEGKFF REAMLKEGTL MQMPDIKDKM PKRTFLPRNI VKNLPFSSST IGEIWRVFGA GENSSMAGII SSAVSECERP ASHGETKRCV GSAEDMIDFA 501: TSVLGRGVVV RTTENVVGSK KKVVIGKVNG INGGDVTRAV SCHQSLYPYL LYYCHSVPRV RVYETDLLDP KSLEKINHGV AICHIDTSAW SPSHGAFLAL 601: GSGPGQIEVC HWIFENDMTW NIID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)