AT3G44940.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1635) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1635); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1635) (TAIR:AT5G22930.1); Has 118 Blast hits to 118 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:16413861..16415134 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 28326.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||
| Length | 250 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQSNSLLSW TYFSHGKTTE ELRQTLVYTT MELEQTKLVA HEELRKRDEQ LIHLEDVLTK TLKERDEALE KYNHLLLNNL LLQQKQQQNQ NQKQELVTPP 101: LSGASSIIED EQVQPQQPQL NSNKSFSSSD TEESIMSPSV IDPVTMNQQI EVSGDEMLAT LLPDKPLPEK GKLLQAVIKA GPLLQTLLLA GPLPQWRHPP 201: PPLETSEIPP VTIPLPQFQN NGCGNSNKKR AFSISDETYS ETKYQKVLLH |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)