AT1G78120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: mitochondrion; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G65160.1); Has 15465 Blast hits to 9436 proteins in 914 species: Archae - 662; Bacteria - 4043; Metazoa - 4340; Fungi - 1570; Plants - 1564; Viruses - 0; Other Eukaryotes - 3286 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29394021..29396003 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59622.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS 101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS 201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD 301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS 401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR 501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)