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AT5G22930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1635)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1635); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1635) (TAIR:AT3G44940.1); Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXTXeggNOG:ENOG410YWC0EMBL:CP002688EnsemblPlants:AT5G22930
EnsemblPlants:AT5G22930.1entrez:832357GeneID:832357Gramene:AT5G22930.1
hmmpanther:PTHR33431hmmpanther:PTHR33431:SF3InParanoid:F4KBD8InterPro:IPR012862
KEGG:ath:AT5G22930OMA:CDGSDSPPaxDb:F4KBD8Pfam:PF07795
PRIDE:F4KBD8Proteomes:UP000006548RefSeq:NP_197684.4STRING:3702.AT5G22930.1
TAIR:AT5G22930UniGene:At.65540UniProt:F4KBD8
Coordinates (TAIR10) chr5:-:7668229..7669315
Molecular Weight (calculated) 27112.60 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.60
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNQSNALLG WPYYSHAKTT EEIRQSLLYT TLELDQTKMF AYEEIRKRDE QLIHLKDILT KTIKERDEAL EKCQRLMFDS HSLQQQKHMT PPLSGASSIE
101: DEQVQPQQLR SNKSFSSSDC EESIMSPTDH IMNPPPCQLE EVSGTEIIMD PLLQDKPLPE KGKLLQAVIK AGPLLQTLLL AGPLPQWRHP PPPLKSFEIP
201: PVTVQCPIVN NGCGKFNRKR VFSDGSYSEA KYQKVLLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)