AT1G28400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9972732..9973739 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39656.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.52 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.63 | ||||||||||||||||||||||||||||
| Length | 335 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFSTRGSLL FFFTTLVLLS TQIHARDSYF FGKFHRESPK DQNPNSFIPL ETSEKTTVEE SVLNKKEQEQ DPTFVPESGN GYGLYGHETT YNNNNDNKEE 101: FNNNNKNDEK VNSKTFSTPS LSETEESFNN YEENYPKKTE NYGTKGYNNE EFNNNNNKYD ANFKEEFNNN KYDENYAKEE FNNNNNNNNY NYKYDENVKE 201: ESFPENNEDN KKNVYNSNAY GTELERETPY KGYSHNLERQ GMSDTRFMEK GSYYYDLYND RNHGHYYRKS HSKSPAGYYS SPATETNYEQ QSYSYGNNNE 301: ENSFKDPYNS KWEKNLMNEQ PEEFVEEQGT NQFKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)