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AT4G24780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G63180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24780-MONOMERBioCyc:ARA:GQT-2048-MONOMERBioGrid:13869CAZy:PL1
EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IPFFEMBL:AF360140
EMBL:AL035356EMBL:AL161562EMBL:AY087561EMBL:CP002687
EMBL:U83621EnsemblPlants:AT4G24780EnsemblPlants:AT4G24780.1EnsemblPlants:AT4G24780.2
entrez:828580ExpressionAtlas:Q9C5M8Gene3D:2.160.20.10GeneID:828580
Genevisible:Q9C5M8GO:GO:0016020GO:GO:0030570GO:GO:0045490
GO:GO:0046872Gramene:AT4G24780.1Gramene:AT4G24780.2hmmpanther:PTHR31683
hmmpanther:PTHR31683:SF15HOGENOM:HOG000237948InParanoid:Q9C5M8InterPro:IPR002022
InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2
KEGG:ath:AT4G24780KO:K01728OMA:QRDMTIQPaxDb:Q9C5M8
Pfam:PF00544Pfam:Q9C5M8PhylomeDB:Q9C5M8PIR:T05556
PRIDE:Q9C5M8PRINTS:PR00807PRO:PR:Q9C5M8ProteinModelPortal:Q9C5M8
Proteomes:UP000006548RefSeq:NP_001190827.1RefSeq:NP_567707.1SMART:SM00656
SMR:Q9C5M8STRING:3702.AT4G24780.1SUPFAM:SSF51126TAIR:AT4G24780
UniGene:At.23543UniPathway:UPA00545UniProt:Q5HZ35UniProt:Q9C5M8
Coordinates (TAIR10) chr4:-:12770631..12772227
Molecular Weight (calculated) 45016.40 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.33
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)