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AT2G39220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PATATIN-like protein 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2643-MONOMEREC:3.1.1.-eggNOG:COG3621eggNOG:KOG0513
EMBL:AC004697EMBL:AY062648EMBL:BT000763EMBL:BT008869
EMBL:CP002685EnsemblPlants:AT2G39220EnsemblPlants:AT2G39220.1entrez:818507
GeneID:818507Genevisible:O80959GO:GO:0006952GO:GO:0016042
GO:GO:0016787Gramene:AT2G39220.1hmmpanther:PTHR32241hmmpanther:PTHR32241:SF3
HOGENOM:HOG000240266InParanoid:O80959InterPro:IPR002641InterPro:IPR016035
iPTMnet:O80959KEGG:ath:AT2G39220OMA:SEMQEPSPaxDb:O80959
Pfam:O80959Pfam:PF01734PhylomeDB:O80959PIR:T02580
PRIDE:O80959PRO:PR:O80959ProteinModelPortal:O80959Proteomes:UP000006548
RefSeq:NP_181455.1SMR:O80959STRING:3702.AT2G39220.1SUPFAM:SSF52151
TAIR:AT2G39220tair10-symbols:PLA IIBtair10-symbols:PLP6UniGene:At.27277
UniProt:O80959
Coordinates (TAIR10) chr2:-:16375055..16376663
Molecular Weight (calculated) 54498.10 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.30
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTTMQRVHN KPIDSIGGFK HLVKQSNGGD GGVTATDMQE PSIETDKLSY EIFSILESKF LFGYDDDLKL MESRSRDPSP EQETASPAMV EALNGVVPGT
101: VKNQRGKVCV LSIDSGGMRG IIPGKALAYL EHALKSKSGD PNARIADYFD VASGSGIGGI FTAMLFASSD GNRPIFKAED TWRFLAMKGK SFYNKSPPGI
201: LNRVMKTGSG GSGGSGSKLE KAMKESFEEL TLKDTLKPVL IPCYDLTSSA PFLFSRADAL ETDGYDFKLW EVCRATWAEP GVFEPVEMRS VDGKTRCVAV
301: DGGLAMSNPT AAAITHVLHN KQEFPFVRGV EDLLVLSLGT GQLVDVKYDC DKVMKWKAKH WARPAVRISA DGAADTVDQA VSMAFGQCRR SNYVRIQANG
401: SSFGPCKPNI DTDASPSNVN MLVGVAEEML KQKNAESVLF GGKKINEESN YEKLDWLAGE LVLEHQRRSC RIAPTVAFKQ SGDRRVDQQT IFKDIDCMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)