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AT2G33620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 969 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 205; Metazoa - 5; Fungi - 3; Plants - 754; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ9UeggNOG:ENOG410YFVMEMBL:AC002332EMBL:AF385705
EMBL:AJ222585EMBL:AY081729EMBL:BR000346EMBL:CP002685
EnsemblPlants:AT2G33620EnsemblPlants:AT2G33620.1EnsemblPlants:AT2G33620.2EnsemblPlants:AT2G33620.3
EnsemblPlants:AT2G33620.4entrez:817928GeneID:817928Genevisible:O22812
GO:GO:0003677GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0006355Gramene:AT2G33620.1Gramene:AT2G33620.2Gramene:AT2G33620.3
Gramene:AT2G33620.4hmmpanther:PTHR31500hmmpanther:PTHR31500:SF0HOGENOM:HOG000116506
InterPro:IPR005175InterPro:IPR017956iPTMnet:O22812KEGG:ath:AT2G33620
OMA:QPVIQNMPaxDb:O22812Pfam:O22812Pfam:PF03479
Pfscan:PS51742PhylomeDB:O22812PIR:G84747PRIDE:O22812
PRO:PR:O22812PROSITE:PS51742ProteinModelPortal:O22812Proteomes:UP000006548
RefSeq:NP_001118437.1RefSeq:NP_565769.1RefSeq:NP_850215.1RefSeq:NP_973590.1
SMART:SM00384SMR:O22812SUPFAM:SSF117856TAIR:AT2G33620
UniGene:At.48546UniGene:At.49689UniGene:At.64420UniProt:O22812
Coordinates (TAIR10) chr2:+:14234749..14236563
Molecular Weight (calculated) 36318.90 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.49
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)