suba logo
AT2G01610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G14890.1); Has 850 Blast hits to 843 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 850; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXANeggNOG:ENOG410YPKAEMBL:AC005560EMBL:AC006069
EMBL:BT030064EMBL:CP002685EnsemblPlants:AT2G01610EnsemblPlants:AT2G01610.1
entrez:814690Gene3D:1.20.140.40GeneID:814690GO:GO:0004857
Gramene:AT2G01610.1hmmpanther:PTHR31080hmmpanther:PTHR31080:SF10HOGENOM:HOG000240597
InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT2G01610
ncoils:CoilOMA:VETFRFQPfam:PF04043PhylomeDB:Q9ZNU5
PIR:H84426Proteomes:UP000006548RefSeq:NP_178270.1SMART:SM00856
SMR:Q9ZNU5STRING:3702.AT2G01610.1SUPFAM:SSF101148TAIR:AT2G01610
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.42477
unipathway:UPA00545UniProt:Q9ZNU5
Coordinates (TAIR10) chr2:-:274124..274792
Molecular Weight (calculated) 23955.20 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.12
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTVSQSHTT TFLFFTTFLL IFGSISAVRL LPRPNTTTTN DLDFIRTSCN ATLYPDVCFT SLSGYASAVQ DSPARLAKLA IGVSLSQAKS TAAFLSKLSR
101: SAAKYSGDGH QTASAVIRDC VSNVEDAVDE MRGSLRQLRD MNGRGGGTAA RRSVETFRFQ MSNVQTWMSA ALTDEDTCTD GFEDMDEGGL IKTTVCDRLE
201: EVKRLTSNAL ALVNTYANNG AP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)