suba logo
AT4G02290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9B13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02290-MONOMERCAZy:GH9EC:3.2.1.4eggNOG:ENOG410IGUD
eggNOG:ENOG410XPC9EMBL:AF075597EMBL:AL161494EMBL:AY079162
EMBL:AY101518EMBL:CP002687EnsemblPlants:AT4G02290EnsemblPlants:AT4G02290.1
entrez:828080Gene3D:1.50.10.10GeneID:828080Genevisible:O81416
GO:GO:0005576GO:GO:0008810GO:GO:0030245GO:GO:0071555
Gramene:AT4G02290.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001hmmpanther:PTHR22298
hmmpanther:PTHR22298:SF55HOGENOM:HOG000021033InParanoid:O81416InterPro:IPR001701
InterPro:IPR008928InterPro:IPR012341InterPro:IPR018221InterPro:IPR033126
iPTMnet:O81416KEGG:00500+3.2.1.4KEGG:ath:AT4G02290OMA:HGPAAHD
PaxDb:O81416Pfam:O81416Pfam:PF00759PhylomeDB:O81416
PIR:T01419PRIDE:O81416PRO:PR:O81416PROSITE:PS00592
PROSITE:PS00698ProteinModelPortal:O81416Proteomes:UP000006548RefSeq:NP_192138.1
scanprosite:PS00592scanprosite:PS00698SMR:O81416STRING:3702.AT4G02290.1
SUPFAM:SSF48208TAIR:AT4G02290tair10-symbols:AtGH9B13tair10-symbols:GH9B13
TMHMM:TMhelixUniGene:At.25411UniProt:O81416
Coordinates (TAIR10) chr4:-:1002654..1005125
Molecular Weight (calculated) 57304.20 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.18
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLLVSSSS SYALRVTIFL SFFFFLCNGF SYPTTSSLFN THHHRHHLAK HNYKDALTKS ILFFEGQRSG KLPSNQRMSW RRDSGLSDGS ALHVDLVGGY
101: YDAGDNIKFG FPMAFTTTML SWSVIEFGGL MKSELQNAKI AIRWATDYLL KATSQPDTIY VQVGDANKDH SCWERPEDMD TVRSVFKVDK NIPGSDVAAE
201: TAAALAAAAI VFRKSDPSYS KVLLKRAISV FAFADKYRGT YSAGLKPDVC PFYCSYSGYQ DELLWGAAWL QKATKNIKYL NYIKINGQIL GAAEYDNTFG
301: WDNKHAGARI LLTKAFLVQN VKTLHEYKGH ADNFICSVIP GAPFSSTQYT PGGLLFKMAD ANMQYVTSTS FLLLTYAKYL TSAKTVVHCG GSVYTPGRLR
401: SIAKRQVDYL LGDNPLRMSY MVGYGPKFPR RIHHRGSSLP CVASHPAKIQ CHQGFAIMNS QSPNPNFLVG AVVGGPDQHD RFPDERSDYE QSEPATYINS
501: PLVGALAYFA HAYGQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)