suba logo
AT1G28290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17885091 (2007): extracellular region
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 31
Curator
Summary (TAIR10)
Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.
Computational
Description (TAIR10)
arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 151286 Blast hits to 46459 proteins in 2422 species: Archae - 571; Bacteria - 36421; Metazoa - 49452; Fungi - 15190; Plants - 16901; Viruses - 4924; Other Eukaryotes - 27827 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIFEeggNOG:ENOG410Z3GSEMBL:AC021044EMBL:AK229236
EMBL:BT029488EMBL:CP002684EnsemblPlants:AT1G28290EnsemblPlants:AT1G28290.1
EnsemblPlants:AT1G28290.2entrez:839723ExpressionAtlas:Q9FZA2Gene3D:2.60.40.10
GeneID:839723Genevisible:Q9FZA2GO:GO:0005576GO:GO:0005886
GO:GO:0009505GO:GO:0009506GO:GO:0009753hmmpanther:PTHR33470
hmmpanther:PTHR33470:SF4HOGENOM:HOG000029062InterPro:IPR013783KEGG:ath:AT1G28290
OMA:CKSCKYAPaxDb:Q9FZA2Pfam:PF01190Pfam:Q9FZA2
PIR:B86409PRO:PR:Q9FZA2ProteinModelPortal:Q9FZA2Proteomes:UP000006548
RefSeq:NP_001077616.1RefSeq:NP_174150.1STRING:3702.AT1G28290.1SwissPalm:Q9FZA2
TAIR:AT1G28290tair10-symbols:AGP31UniGene:At.47585UniProt:Q9FZA2
Coordinates (TAIR10) chr1:-:9889331..9890843
Molecular Weight (calculated) 38490.70 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.47
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFIGKSVLV SLVALWCFTS SVFTEEVNHK TQTPSLAPAP APYHHGHHHP HPPHHHHPHP HPHPHPPAKS PVKPPVKAPV SPPAKPPVKP PVYPPTKAPV
101: KPPTKPPVKP PVSPPAKPPV KPPVYPPTKA PVKPPTKPPV KPPVYPPTKA PVKPPTKPPV KPPVYPPTKA PVKPPTKPPV KPPVSPPAKP PVKPPVYPPT
201: KAPVKPPVSP PTKPPVTPPV YPPKFNRSLV AVRGTVYCKS CKYAAFNTLL GAKPIEGATV KLVCKSKKNI TAETTTDKNG YFLLLAPKTV TNFGFRGCRV
301: YLVKSKDYKC SKVSKLFGGD VGAELKPEKK LGKSTVVVNK LVYGLFNVGP FAFNPSCPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)