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AT2G03090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At2g03090
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A15
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2HeggNOG:ENOG410YCRVEMBL:AY499535EMBL:AY510271
EnsemblPlants:AT2G03090EnsemblPlants:AT2G03090.1entrez:814838ExpressionAtlas:A1KXV8
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:814838GO:GO:0005576
GO:GO:0005618GO:GO:0009664GO:GO:0016020Gramene:AT2G03090.1
hmmpanther:PTHR31867InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117
InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT2G03090OMA:CFEIKCQ
PaxDb:O80622Pfam:O80622Pfam:PF01357Pfam:PF03330
Pfscan:PS50842Pfscan:PS50843PhylomeDB:A1KXV8PRINTS:PR01225
PRINTS:PR01226PROSITE:PS50842PROSITE:PS50843RefSeq:NP_178409.2
SMART:SM00837SMR:A1KXV8STRING:3702.AT2G03090.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT2G03090tair10-symbols:ATEXP15tair10-symbols:ATEXPA15
tair10-symbols:ATHEXP ALPHA 1.3tair10-symbols:EXP15tair10-symbols:EXPA15TMHMM:TMhelix
UniGene:At.41431UniGene:At.67706UniProt:A1KXV8UniProt:O80622
Coordinates (TAIR10) chr2:-:917361..918554
Molecular Weight (calculated) 27078.20 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.02
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MFMGKMGLLG IALFCFAAMV CSVHGYDAGW VNAHATFYGG SDASGTMGGA CGYGNLYSQG YGTNTAALST ALFNNGLSCG ACFEIKCQSD GAWCLPGAII
101: VTATNFCPPN NALPNNAGGW CNPPLHHFDL SQPVFQRIAQ YKAGVVPVSY RRVPCMRRGG IRFTINGHSY FNLVLVTNVG GAGDVHSVAV KGSRTRWQQM
201: SRNWGQNWQS NNLLNGQALS FKVTASDGRT VVSNNIAPAS WSFGQTFTGR QFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)