AT3G12970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 2408 Blast hits to 418 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 198; Fungi - 63; Plants - 125; Viruses - 13; Other Eukaryotes - 1968 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4141329..4142474 | ||||||||||||||||||||
| Molecular Weight (calculated) | 41510.50 Da | ||||||||||||||||||||
| IEP (calculated) | 10.56 | ||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASGCVKNVG TSPSHSWTSS KMSLTRESQP LAPALENEDP VDDFEFLLED PVTMLSADEL FSDGKLVPLK FSGVTYPEEK PITSVVHTAV KPCRRLEMEI 101: SGVVDPYLFS PRAPRCTVRW RELLGLKRLA KTQQEASASS SSRLSSSSPN PKTASFRHFL NRSSKSTAQQ PSHPPPGKDS DILESSSTSI SSSRLSLSSS 201: SSSGHELDDL PRLSLDLDNK PGTPNPFARS RAHHHHHLRN QNQPRKPRRH TQVDESTESS IESRVMTVTA DSPRLNASGK IVFHGLERSS SSPGNFTGGP 301: RMKLHHGMPR SHSANVRITP VLNVPVSSLR SGPKSGLFFG QLFASSSSAS SSSSSGNRAQ LQSNNIKNRT NRSRLEPTSE L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)