suba logo
AT5G40030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, embryo, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 111692 Blast hits to 81240 proteins in 2732 species: Archae - 30; Bacteria - 14475; Metazoa - 44429; Fungi - 12685; Plants - 18495; Viruses - 325; Other Eukaryotes - 21253 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G40030-MONOMEReggNOG:ENOG410XQ0CeggNOG:KOG0610EMBL:AB022222
EMBL:CP002688EnsemblPlants:AT5G40030EnsemblPlants:AT5G40030.1entrez:834000
Gene3D:2.30.29.30GeneID:834000GO:GO:0004672GO:GO:0005524
GO:GO:0016301Gramene:AT5G40030.1hmmpanther:PTHR24351hmmpanther:PTHR24351:SF84
HOGENOM:HOG000233027InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR011993KEGG:ath:AT5G40030OMA:KVMDKGMPfam:PF00069
Pfscan:PS50011PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548
RefSeq:NP_198819.1scanprosite:PS00108SMART:SM00220STRING:3702.AT5G40030.1
SUPFAM:SSF56112TAIR:AT5G40030UniGene:At.55268UniProt:Q9LUK3
Coordinates (TAIR10) chr5:+:16026227..16028283
Molecular Weight (calculated) 55498.50 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.33
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKQTPNLES LQDCSSSNYN NANASPVSGS ASFKTSSNGS EDVRLNNSIS LSFCSSNSVS SEANLEKTQS FDANEANFKR VFAPSKPHKG NDLRWDAIQN
101: VKCSKNEDLG LGHFRLLKKL GCGDIGSVYL AELREMGCFF AMKVMDKGML IGRKKLVRAQ TEREILGLLD HPFLPTLYSH FETEKFSCLL MEFCSGGDLH
201: ILRQKQPGKH FSELAARFYA SEVLLALEYL HMMGVVYRDL KPENVMVRED GHIMLSDFDL SLQSFVSPTL IQSTSQPSCH IASYCIQPPC IDPSCKLPVA
301: CIQPSCFKPR FLNNKPRKAK TEKAGSDSLP MLIAEPTAAR SMSFVGTHEY LAPEIIRGDG HGSSVDWWTF GIFLYELLTG KTPFKGNGNR ETLFNVVGQP
401: LKFPEGSISF AAKDLIRGLL TKDPKKRLGF KKGATEIKQH PFFNNVNWAL IRSTTPPEIP KPIDLSILNE TLKSSVQQQG KHSKQSDSSS GPYLDFEFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)