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AT2G23050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational
Description (TAIR10)
NAKED PINS IN YUC MUTANTS 4 (NPY4); FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 915 Blast hits to 887 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 873; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:2188eggNOG:ENOG410JX48eggNOG:ENOG41104B8EMBL:AC004401
EMBL:AK117486EMBL:AY102541EMBL:AY954795EMBL:BT005613
EMBL:CP002685EnsemblPlants:AT2G23050EnsemblPlants:AT2G23050.1entrez:816835
GeneID:816835Genevisible:O64814GO:GO:0009958GO:GO:0016567
GO:GO:0071944Gramene:AT2G23050.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF26
HOGENOM:HOG000239180InParanoid:O64814IntAct:O64814InterPro:IPR000210
InterPro:IPR011333InterPro:IPR027356KEGG:ath:AT2G23050OMA:IVPKDWW
PaxDb:O64814Pfam:O64814Pfam:PF00651Pfam:PF03000
Pfscan:PS50097Pfscan:PS51649PhylomeDB:O64814PIR:H84619
PRIDE:O64814PRO:PR:O64814PROSITE:PS50097PROSITE:PS51649
ProteinModelPortal:O64814Proteomes:UP000006548RefSeq:NP_179887.1STRING:3702.AT2G23050.1
SUPFAM:SSF54695TAIR:AT2G23050tair10-symbols:NPY4UniGene:At.39350
UniPathway:UPA00143UniProt:O64814
Coordinates (TAIR10) chr2:+:9810785..9812468
Molecular Weight (calculated) 54957.10 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.33
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMKLGTKP DSFLSKGDNV RYVTNELETE IIIIIGNVKF YLHKFPLLSK SGFLQKHIAT SKNEEEKKNQ IDEIDISEIP GGSVAFEICV KFCYGITVTL
101: NAYNVVAVRC AAEFLEMNET FEKSNLVYKI DVFLNSTIFR SWKDSIIVLQ TTKDLLSDDS EELVKRCLGS IASTASIDTS KVKWSYTYNR KKKLEKVRKP
201: EDGVPKDWWV EDLCELHIDL YKQAIKAIKN RGKVPSNVIG EALHAYAIRR IAGFSKESMQ LIDRSLINTI IELLPDEKGN ISSSFLTKLH RASIFLGCEE
301: TVKEKLKKRV SEQLEETTVN DILMYDLDMV QSLVKEFMNR DPKTHSKVSV AKLIDGYLAE KSRDPNLPLQ NFLSLAETLS SFPRHSHDVL YRAIDMFLKE
401: HSGISKSEKK RVCGLMDCRK LSAEACEHAV QNERLPMRVI VQVLFFEQIR ANGSSTGYST PELTTTTLNT EDDEWDHEKE F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)