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AT1G51190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
Computational
Description (TAIR10)
PLETHORA 2 (PLT2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1); Has 7787 Blast hits to 5250 proteins in 253 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 7694; Viruses - 2; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEVJeggNOG:ENOG410Y9X6EMBL:AC006085EMBL:AY506550
EMBL:AY585681EMBL:BT020277EMBL:BT020460EMBL:CP002684
EnsemblPlants:AT1G51190EnsemblPlants:AT1G51190.1entrez:841542Gene3D:3.30.730.10
GeneID:841542Genevisible:Q5YGP7GO:GO:0000723GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007389
GO:GO:0009734GO:GO:0009873GO:GO:0010073GO:GO:0010449
GO:GO:0019827GO:GO:0048364Gramene:AT1G51190.1hmmpanther:PTHR32467
hmmpanther:PTHR32467:SF12HOGENOM:HOG000239258InParanoid:Q5YGP7IntAct:Q5YGP7
InterPro:IPR001471InterPro:IPR016177InterPro:IPR031112KEGG:ath:AT1G51190
KO:K09285OMA:PYNDIHQPANTHER:PTHR32467PaxDb:Q5YGP7
Pfam:PF00847Pfam:Q5YGP7Pfscan:PS51032PhylomeDB:Q5YGP7
PIR:F96549PRIDE:Q5YGP7PRINTS:PR00367PRO:PR:Q5YGP7
PROSITE:PS51032ProteinModelPortal:Q5YGP7Proteomes:UP000006548RefSeq:NP_175530.2
SMART:SM00380SMR:Q5YGP7STRING:3702.AT1G51190.1SUPFAM:SSF54171
TAIR:AT1G51190tair10-symbols:PLT2UniGene:At.49968UniProt:Q5YGP7
Coordinates (TAIR10) chr1:+:18977517..18980305
Molecular Weight (calculated) 62236.50 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.68
Length 568 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)