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AT1G16490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 58
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 58 (MYB58); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 63 (TAIR:AT1G79180.1); Has 8863 Blast hits to 8152 proteins in 473 species: Archae - 0; Bacteria - 3; Metazoa - 752; Fungi - 456; Plants - 5848; Viruses - 6; Other Eukaryotes - 1798 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB493459EMBL:AC006341
EMBL:CP002684EnsemblPlants:AT1G16490EnsemblPlants:AT1G16490.1entrez:838219
Gene3D:1.10.10.60GeneID:838219GO:GO:0003677GO:GO:0003700
GO:GO:0009809GO:GO:0045893GO:GO:2000652Gramene:AT1G16490.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF462HOGENOM:HOG000237600IntAct:Q9SA47
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G16490
KO:K09422ncoils:CoilOMA:HKYGHENPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9SA47PIR:D86300PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_173098.1SMART:SM00717SMR:Q9SA47
STRING:3702.AT1G16490.1SUPFAM:SSF46689TAIR:AT1G16490tair10-symbols:ATMYB58
tair10-symbols:MYB58UniGene:At.11321UniProt:Q9SA47
Coordinates (TAIR10) chr1:-:5629859..5630844
Molecular Weight (calculated) 31462.30 Da
IEP (calculated) 4.88
GRAVY (calculated) -1.01
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)