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AT5G63660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Scorpion toxin-like knottin superfamily protein
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational
Description (TAIR10)
PDF2.5; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, root, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 396 Blast hits to 396 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3WFeggNOG:ENOG41119RBEMBL:AB005234EMBL:CP002688
EnsemblPlants:AT5G63660EnsemblPlants:AT5G63660.1entrez:836486Gene3D:3.30.30.10
GeneID:836486Genevisible:Q9FFP8GO:GO:0005576GO:GO:0006952
GO:GO:0031640GO:GO:0050832Gramene:AT5G63660.1hmmpanther:PTHR33147
hmmpanther:PTHR33147:SF3HOGENOM:HOG000238637InParanoid:Q9FFP8InterPro:IPR003614
InterPro:IPR008177KEGG:ath:AT5G63660OMA:VCESQSHPaxDb:Q9FFP8
Pfam:PF00304Pfam:Q9FFP8PhylomeDB:Q9FFP8PRIDE:Q9FFP8
PRINTS:PR00288PRO:PR:Q9FFP8ProteinModelPortal:Q9FFP8Proteomes:UP000006548
RefSeq:NP_201171.1SMART:SM00505SMR:Q9FFP8STRING:3702.AT5G63660.1
SUPFAM:SSF57095TAIR:AT5G63660tair10-symbols:LCR74tair10-symbols:PDF2.5
UniGene:At.55692UniProt:Q9FFP8
Coordinates (TAIR10) chr5:+:25485692..25486062
Molecular Weight (calculated) 8388.16 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.13
Length 73 amino acids
Sequence (TAIR10)
(BLAST)
1: MENKFFAAFF LLLVLFSSQE IIGGEGRTCQ SKSHHFKYMC TSNHNCAIVC RNEGFSGGRC HGFHRRCYCT RLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)