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AT4G36920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.
Computational
Description (TAIR10)
APETALA 2 (AP2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 3 (TAIR:AT5G67180.1); Has 8542 Blast hits to 5152 proteins in 275 species: Archae - 0; Bacteria - 58; Metazoa - 3; Fungi - 0; Plants - 8374; Viruses - 7; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
BioGrid:15126eggNOG:ENOG410IEQUeggNOG:ENOG410YBZ8EMBL:AL161590
EMBL:AY128328EMBL:CP002687EMBL:U12546EMBL:Z99707
EnsemblPlants:AT4G36920EnsemblPlants:AT4G36920.1EnsemblPlants:AT4G36920.2entrez:829845
Gene3D:3.30.730.10GeneID:829845Genevisible:P47927GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009908
GO:GO:0010073GO:GO:0010093GO:GO:0030154GO:GO:0048316
GO:GO:0048481Gramene:AT4G36920.1Gramene:AT4G36920.2hmmpanther:PTHR32467
hmmpanther:PTHR32467:SF18HOGENOM:HOG000033977InParanoid:P47927InterPro:IPR001471
InterPro:IPR016177InterPro:IPR031112KEGG:ath:AT4G36920KO:K09284
OMA:AENHRFDPANTHER:PTHR32467PaxDb:P47927Pfam:P47927
Pfam:PF00847Pfscan:PS51032PhylomeDB:P47927PIR:A85436
PRIDE:P47927PRINTS:PR00367PRO:PR:P47927PROSITE:PS51032
ProteinModelPortal:P47927Proteomes:UP000006548RefSeq:NP_001190938.1RefSeq:NP_195410.1
SMART:SM00380SMR:P47927STRING:3702.AT4G36920.1SUPFAM:SSF54171
TAIR:AT4G36920tair10-symbols:AP2tair10-symbols:FL1tair10-symbols:FLO2
UniGene:At.4638UniProt:P47927
Coordinates (TAIR10) chr4:+:17400998..17403140
Molecular Weight (calculated) 47836.00 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.79
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)