AT5G42320.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.856 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Zn-dependent exopeptidases superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: metallocarboxypeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M14, carboxypeptidase A (InterPro:IPR000834); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:16918651..16920845 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43281.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEQIHSLVHR HPDKLSIELI KSGNKGYNAE VNVVTYCRGG KESDDRSNFR ILLTFGQHGR ELITSELAFR ILSILSEEQF LPNKNGGILK NTLDKLVIKM 101: VPIENPNGRK RVESGDLCER RNGRGVDLNR NWGVDWGKKE KDYDPSEENP GTAPFSEPET QIMRKLAISF DPHIWINVHS GMEALFMPYD HKNITPEGLP 201: SQKMRTLLEK LNKFHCHDRC MIGSGGGSVG YLAHGTATDY IYDVVKAPMA FTFEIYGDNQ TASRDCFKMF NPVDLPNFKR VLNDWSAAFF TIFQLGPLHL 301: DGNTSKAADK WVSIDEYLDG YLVERKNRYG KNMEVIDVGM QEIKTYFRLF LLSSVLLMFM FCSRIAKSKY SRNSMPVLP |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)