AT2G19880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.402 endoplasmic reticulum 0.397 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: ceramide glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); Has 235 Blast hits to 233 proteins in 112 species: Archae - 26; Bacteria - 60; Metazoa - 91; Fungi - 18; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8581578..8585118 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58716.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTLDSIDAI LFSLSRAFTS PFAVFVQIQG CTICLLLALG WLLAEYVRNR EVKRIKNSIK AGNSLAFLYQ DINELEHSRQ VKLPRVSVVM PLKGFGEHNL 101: HNWRSQITSL YGGPLEFLFV VESTEDPAYH AVSRLLSMYQ DHVEAKVVVA GLSTTCSQKI HNQLIGVEKM HKDTKYVLFL DDDVRLHPGT IGALTTEMEK 201: NPEIFIQTGY PLDLPSGTLG SYCIYEYHMP CSMGFATGGR TFFLWGGCMM MHADDFRQDR YGVVSGLRDG GYSDDMTLAS LAGAHKRLIT SPPVAVFPHP 301: LASDLSFGRY WNYLRKQTFV LESYISKVNW IMNKALFAVH CYLSWGFVAP YVMAIIHITS ALRIYIKGYH QLEDTTSASG MMLVITLAIC TFIELLSMWN 401: LTRREVQLCN MLSPEAPRLS LATYNWGLVF VAMLVDNFLY PISAFRSHFS QSINWSGIRY HLKDGKIFKI ERRKDMGPTK TDLGGKHLYG KKGAPQKASF 501: LSSLGRNLAH WRQPKKFDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)