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AT5G01460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LMBR1-like membrane protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LMBR1-like membrane protein; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT3G08930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHNReggNOG:ENOG410XRDUEMBL:AL161746EMBL:AY072197
EMBL:AY096440EMBL:CP002688EnsemblPlants:AT5G01460EnsemblPlants:AT5G01460.1
entrez:831815GeneID:831815Genevisible:Q9M028GO:GO:0005886
GO:GO:0016021Gramene:AT5G01460.1hmmpanther:PTHR31652HOGENOM:HOG000265403
InParanoid:Q9M028InterPro:IPR006876KEGG:ath:AT5G01460KO:K14617
ncoils:CoilOMA:QHPDDRNPaxDb:Q9M028Pfam:PF04791
Pfam:Q9M028PhylomeDB:Q9M028PIR:T48168PRIDE:Q9M028
PRO:PR:Q9M028Proteomes:UP000006548RefSeq:NP_195766.1SwissPalm:Q9M028
TAIR:AT5G01460TMHMM:TMhelixUniGene:At.23267UniProt:Q9M028
Coordinates (TAIR10) chr5:+:186823..190008
Molecular Weight (calculated) 56505.00 Da
IEP (calculated) 9.08
GRAVY (calculated) 0.61
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDFNLALVI VAIVVCVIVF ISSIYLLVNY QHPDDANQAY FPKFVVVFGL SIAMISILML PADVANRHAC RHSIYNGACN LTLPMKDLWL AVYIVDAVLV
101: FFIIPFAMFF YEGDQDKALG KRIKSALIWV VTTAVVCALV LGILYGVIGK VDFSVRHLSS ATTTFPTSWQ FSNNQPCIGN TARQCSAYTA NAASEKTWSM
201: RTTFPEYVVA LATIVGSVLF TIFGGVGIAC LPLGLITAFI RRPKAVITRS QYIKEATELG KKARDLKKAA DALHQEERSG AKGRKWRKNV KAVEKELLQL
301: EEDVNLLEEM YPQGEQAETA WAFTVLGYLA KFVLGILGLI VSVAWIAHII IYLLVDPPLS PFLNEVFIKL DDVWGLLGTA AFAFFCFYLL LAVIAGAMML
401: GLKLVFITIH PMKWGATLMN SFLFNVGLIL LCSISVIQFC ATAFGYYAQA TAAQEIFGHT LQSLRGIKYL YKYNVFQIGF VVLAGLTFLY YIAFGWRRKK
501: PSGRFQLST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)