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AT3G26935.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G41060.1); Has 5153 Blast hits to 5144 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 770; Plants - 850; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1311
EMBL:AB026649EMBL:AK228693EMBL:AP000602EMBL:CP002686
EnsemblPlants:AT3G26935EnsemblPlants:AT3G26935.1entrez:822311GeneID:822311
Genevisible:Q0WQK2GO:GO:0005886GO:GO:0008270GO:GO:0016021
GO:GO:0019706Gramene:AT3G26935.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF80
HOGENOM:HOG000242943InParanoid:Q0WQK2InterPro:IPR001594iPTMnet:Q0WQK2
KEGG:ath:AT3G26935OMA:VPWDEPRPaxDb:Q0WQK2Pfam:PF01529
Pfam:Q0WQK2Pfscan:PS50216PhylomeDB:Q0WQK2PRIDE:Q0WQK2
PRO:PR:Q0WQK2PROSITE:PS50216Proteomes:UP000006548RefSeq:NP_850638.1
STRING:3702.AT3G26935.1TAIR:AT3G26935TMHMM:TMhelixUniGene:At.47119
UniProt:Q0WQK2
Coordinates (TAIR10) chr3:-:9933001..9935218
Molecular Weight (calculated) 49919.10 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.21
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVVPPPQRS DSGSNGDLRV YQTWKGSNIF FLQGRFVFGP DVRSLALTIC LIAVPVTIFC IFVARKLIDD FSDSWGVSIV AVAVVFTIYD LILLLLTSGR
101: DPGIIPRNAH PPEPETLDGN MDAGAGQTPQ LRLPRIKEVQ LNGITFKVKY CDTCMLYRPP RCSHCSICNN CVERFDHHCP WVGQCIGMRN YRFFFMFVFS
201: TTLLCIYVFA FCWVYIRKIM ESEHTTTWKA MLKTPASIVL IIYTFISMWF VGGLTVFHLY LISTNQTTYE NFRYRYDRRS NPHNKGVVNN FKETFFSTIP
301: PSKNDFRAMV QREPPLPPRS VAGGFMSPNM GKANDEIEMG RKAVWADMGP AMSDHGDGKH GNNERLHVKD GELGELSPDI RATVDEQSDR PSMHPRRSSW
401: GRKSGSWDMS PEVMALAARV GEQNQNGGGS SSGSGLVTEN RPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)