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AT5G50020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G24630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20312BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273
eggNOG:KOG1311EMBL:AB026650EMBL:AY070050EMBL:AY096683
EMBL:CP002688EMBL:JF792493EnsemblPlants:AT5G50020EnsemblPlants:AT5G50020.1
entrez:835066GeneID:835066Genevisible:Q8VYS8GO:GO:0005886
GO:GO:0008270GO:GO:0016021GO:GO:0019706hmmpanther:PTHR22883
hmmpanther:PTHR22883:SF74HOGENOM:HOG000242943InParanoid:Q8VYS8IntAct:Q8VYS8
InterPro:IPR001594iPTMnet:Q8VYS8KEGG:ath:AT5G50020OMA:GIDIEMG
PaxDb:Q8VYS8Pfam:PF01529Pfam:Q8VYS8Pfscan:PS50216
PhylomeDB:Q8VYS8PRIDE:Q8VYS8PRO:PR:Q8VYS8PROSITE:PS50216
Proteomes:UP000006548RefSeq:NP_001190503.1RefSeq:NP_199813.2STRING:3702.AT5G50020.2
TAIR:AT5G50020TMHMM:TMhelixUniGene:At.28420UniProt:Q8VYS8
Coordinates (TAIR10) chr5:+:20351591..20354124
Molecular Weight (calculated) 47107.10 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.31
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRVFEAWK GSNKFLFGGR LIFGPDAWSI PFTFLLIITP VCFFSVFVAT HLRRELLPNN AGHVFLVAGV LFTVFVLILL FLTSARDPGI VPRNSHPPEE
101: ELCYDTTVSS DGRQTPTVQI PRTKEVMVYG VSVRVKYCDT CMLYRPPRCS HCSICNNCVE RFDHHCPWRN YRYFFMFVSS ATILCIYIFS MSALYIKVLM
201: DNHQGTVWRA MRESPWAVML MIYCFISLWF VGGLTGFHLY LISTNQTTYE NFRYRSDNRI NVYNRGCSNN FFETFCSKVK PSRNDFRAFI KEEPPRNITL
301: ATTWERPEEA DEENREERRQ KVEDDLDIDE DVMKLQQRLN DEEGSDTAHH KIDIDQMRIG SNERAPTIRS EARHGNWGAR SNAQEEDVIA GSSVRESRSY
401: AAAEEGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)