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AT1G54080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21311031 (2011): plastid
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : oligouridylate-binding protein 1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQXJeggNOG:ENOG410XQ8UEMBL:AC006577EMBL:AF348587
EMBL:AF361639EMBL:AY133610EMBL:CP002684EnsemblPlants:AT1G54080
EnsemblPlants:AT1G54080.1entrez:841846ExpressionAtlas:Q9SYG4Gene3D:3.30.70.330
GeneID:841846Genevisible:Q9SYG4GO:GO:0000166GO:GO:0003723
GO:GO:0005634GO:GO:0006397hmmpanther:PTHR24012hmmpanther:PTHR24012:SF379
HOGENOM:HOG000206748IntAct:Q9SYG4InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9SYG4KEGG:ath:AT1G54080KO:K13201PaxDb:Q9SYG4
Pfam:PF00076Pfam:Q9SYG4Pfscan:PS50102PhylomeDB:Q9SYG4
PIR:E96581PRIDE:Q9SYG4PRO:PR:Q9SYG4PROSITE:PS50102
ProteinModelPortal:Q9SYG4Proteomes:UP000006548RefSeq:NP_175810.1SMART:SM00360
SMR:Q9SYG4STRING:3702.AT1G54080.2SUPFAM:SSF54928SUPFAM:SSF81995
TAIR:AT1G54080tair10-symbols:UBP1AUniGene:At.23098UniProt:Q9SYG4
Coordinates (TAIR10) chr1:-:20183923..20186824
Molecular Weight (calculated) 47236.60 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.51
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)