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AT4G34110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.668
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : poly(A) binding protein 2
Curator
Summary (TAIR10)
Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins.
Computational
Description (TAIR10)
poly(A) binding protein 2 (PAB2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to salt stress, translational initiation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 987994 Blast hits to 947802 proteins in 35008 species: Archae - 20430; Bacteria - 568582; Metazoa - 213912; Fungi - 30250; Plants - 62241; Viruses - 64851; Other Eukaryotes - 27728 (source: NCBI BLink).
Protein Annotations
BioGrid:14839eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AL021961
EMBL:AL161584EMBL:AY080718EMBL:BT002354EMBL:CP002687
EMBL:L19418EnsemblPlants:AT4G34110EnsemblPlants:AT4G34110.1entrez:829557
Gene3D:1.10.1900.10Gene3D:3.30.70.330GeneID:829557Genevisible:P42731
GO:GO:0000166GO:GO:0000184GO:GO:0003743GO:GO:0005634
GO:GO:0005829GO:GO:0006413GO:GO:0006446GO:GO:0009651
GO:GO:0016032GO:GO:0060211GO:GO:1900151Gramene:AT4G34110.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF349HOGENOM:HOG000217922InParanoid:P42731
IntAct:P42731InterPro:IPR000504InterPro:IPR002004InterPro:IPR002343
InterPro:IPR003954InterPro:IPR006515InterPro:IPR012677KEGG:ath:AT4G34110
KO:K13126ncoils:CoilOMA:NYIPLYGPaxDb:P42731
Pfam:P42731Pfam:PF00076Pfam:PF00658Pfscan:PS50102
Pfscan:PS51309PhylomeDB:P42731PIR:T05425PRIDE:P42731
PRINTS:PR00961PRO:PR:P42731PROSITE:PS50102PROSITE:PS51309
ProteinModelPortal:P42731Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_195137.5SMART:SM00360SMART:SM00361
SMART:SM00517SMR:P42731STRING:3702.AT4G34110.1SUPFAM:SSF54928
SUPFAM:SSF63570TAIR:AT4G34110tair10-symbols:ATPAB2tair10-symbols:PAB2
tair10-symbols:PABP2TIGRfam:TIGR01628TIGRFAMs:TIGR01628UniGene:At.25252
UniProt:P42731
Coordinates (TAIR10) chr4:+:16336732..16339892
Molecular Weight (calculated) 68676.50 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.51
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)