AT1G80000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CASC3/Barentsz eIF4AIII binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30093195..30096742 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65696.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPDGVEDSD YESDPDELNR SLATRRREAS DDDEDDEEAD DHDKLRAAIQ IHSDEHSGVV VVDSDDNEGL HIEDSYGDDD DEEEDGDYGQ VDDHVEYIAD 101: NNDKTIVAGN GTDDSAATDL VDGEEQKKKE PFAVPTAGAF YMHDDRFQEL DAASNRRMRG GRRLWQSRDE RKWGHDKFEE MNTQKQQYDR RTSRGRGRGR 201: GQGRGQDRGQ SRGNNSKEFT GNGHQNQFPK AVTRGRGARR YEVALRNGNQ APSVQTKQSQ NSSVEVSHVD LGRPPTETAT LETEAIQAKK NVFASSLNSA 301: SPPFYPSRSN NNLAQKDVQA GMGRLHINEN PNPTGKKFGN TKSSSLWGRT AQTTSHGRGV PPHGQVLYQQ SPNQGDKVSS PMQIRGMPKG TDQSCTQLPG 401: QVFNQHSAVI SLLPSSPPKT GSSENPYLSG EIESAVETGA LVAKGKGSLQ PSGRGSFMYG GTQFMGPAGM AAGHGNPNFP AFLPVMQFGG QHGGVPTFGM 501: ALPGYFQPEH GTGNPEMTWL PILAGPGALG GSYCPPYTVL DGSYQADKPG LPSSAGSSSQ ENSSNNPNDE EPMERPEVTN NGNSQRSNSN PNKQPRRYSE 601: MSFSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)