AT4G20300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1639) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 587 Blast hits to 572 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 183; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:10955813..10958287 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 38135.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.46 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.18 | ||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRYQRVSPD CLPLTNGGKK PYLRPSPSRA TNEDTTTTTV ITTTSIAGRG FNGGSCTTTT NNTSSLDGVP KGFRFRSTQQ QQQQQDPSPS RRGGDVLLQW 101: GQRKRSRASR AEIRSTTTIT TTADDSSSSS GQGKIQSNKP QRRSMNPSMP PPPPAPPIFS GRSTNPRNGF VIGKESFFPS RNLEDRSANG SPSRNNINGR 201: MISRSGGSKR SPPSPDQIEK RSSVRDQRQN GFDHQQQQHQ RVNRSESTAQ GHQEVEINGE REKATQEWPR IYIALSRKEK EEDFLVMKGT KLPHRPRKRA 301: KNIDKALQFC FPGMWLSDLT KNRYEVREKK NVKKVINFT |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)