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AT5G09850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription elongation factor (TFIIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF16eggNOG:ENOG411201AEMBL:AB016893EMBL:AY058141
EMBL:AY093710EMBL:CP002688EnsemblPlants:AT5G09850EnsemblPlants:AT5G09850.1
entrez:830845Gene3D:1.20.930.10GeneID:830845Genevisible:F4KFC7
GO:GO:0003677GO:GO:0003746GO:GO:0005634GO:GO:0005829
GO:GO:0006351GO:GO:0006355Gramene:AT5G09850.1HOGENOM:HOG000243987
InParanoid:F4KFC7InterPro:IPR003617InterPro:IPR017923iPTMnet:F4KFC7
KEGG:ath:AT5G09850ncoils:CoilOMA:NSNITEPPaxDb:F4KFC7
Pfam:F4KFC7Pfam:PF08711Pfscan:PS51319PRIDE:F4KFC7
PRO:PR:F4KFC7PROSITE:PS51319ProteinModelPortal:F4KFC7Proteomes:UP000006548
RefSeq:NP_568218.1SMART:SM00509SMR:F4KFC7STRING:3702.AT5G09850.1
SUPFAM:SSF47676TAIR:AT5G09850UniGene:At.23236UniProt:F4KFC7
Coordinates (TAIR10) chr5:-:3063488..3065221
Molecular Weight (calculated) 40060.40 Da
IEP (calculated) 4.93
GRAVY (calculated) -1.04
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDDFRSVM DNAGVDVWTF IDTAILVASL DYGQELKRRR DNIVERLYAT SMANKCRNCD FGGGGNVTEA AIGRVNNGRV HEETEEEDEE GVTAAAEEEV
101: REKSVNVEDD DDFDPFAGLF DDEQKSIVEI KEKLEDPDLS EESLVELLQN LEDMDITFQA LQETDIGRHV NRVRKHPSNN VRRLAKQLVK KWKETVDEWV
201: KFNQPGDLEP PSLIADEDSP VQKALHNGSR QQVPDFGYSP VPQNGYSSSS KNSNITEPER KPRPVAPQPR RESPSPAKPS RPSPSQQTIP RDKEHKEVDF
301: DTARKRLQQN YRQAENAKKQ RTIQVMDIHD IPKPKKGGFF PRKGGSSQGG RHW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)