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AT4G36890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.
Computational
Description (TAIR10)
irregular xylem 14 (IRX14); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT5G67230.1); Has 636 Blast hits to 635 proteins in 91 species: Archae - 0; Bacteria - 2; Metazoa - 399; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36890-MONOMERBRENDA:2.4.2.24CAZy:GT43EC:2.4.2.-
eggNOG:ENOG410XP79eggNOG:KOG1476EMBL:AL161590EMBL:AY140036
EMBL:BT014969EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G36890
EnsemblPlants:AT4G36890.1entrez:829842ExpressionAtlas:Q8L707Gene3D:3.90.550.10
GeneID:829842Genevisible:Q8L707GO:GO:0000139GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0009834GO:GO:0010051
GO:GO:0010154GO:GO:0010417GO:GO:0015018GO:GO:0016021
GO:GO:0042285GO:GO:0045492GO:GO:0047517GO:GO:0048354
GO:GO:0048367GO:GO:0071555Gramene:AT4G36890.1gramene_pathway:2.4.2.24
gramene_pathway:PWY-5800hmmpanther:PTHR10896hmmpanther:PTHR10896:SF17HOGENOM:HOG000242041
InParanoid:Q8L707InterPro:IPR005027InterPro:IPR029044iPTMnet:Q8L707
KEGG:ath:AT4G36890OMA:LKDLSMVPANTHER:PTHR10896PaxDb:Q8L707
Pfam:PF03360Pfam:Q8L707PhylomeDB:Q8L707PIR:F85435
PRIDE:Q8L707PRO:PR:Q8L707ProteinModelPortal:Q8L707Proteomes:UP000006548
RefSeq:NP_195407.2SMR:Q8L707STRING:3702.AT4G36890.1SUPFAM:SSF53448
TAIR:AT4G36890tair10-symbols:IRX14TMHMM:TMhelixUniGene:At.31289
UniGene:At.67343UniProt:Q8L707UniProt:W8Q2W9
Coordinates (TAIR10) chr4:-:17379631..17381627
Molecular Weight (calculated) 59102.50 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.28
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSALHQSY LNRRSNSFRS PTSLDSSVDG SGKSLIAVFW LILHCLCCLI SLVLGFRFSR LVFFFLFSTS STNLYSLPFR PDLPVKHLDV HTIGRTLDPG
101: ANGTTVVATA TKSSRVVVGR HGIRIRPWPH PNPVEVMKAH QIIGRVQKEQ KMIFGMKSSK MVIAVTPTYV RTFQALHLTG VMHSLMLVPY DLVWIVVEAG
201: GATNETGLII AKSGLRTIHV GIDQRMPNTW EDRSKLEVFM RLQALRVVRE EKLDGIVMFA DDSNMHSMEL FDEIQNVKWF GTVSVGILAH SGNAEEMVLS
301: MEKRKEMEKE EEEESSSLPV QGPACNSTDQ LIGWHIFNTL PYAGKSAVYI DDVAAVLPQK LEWSGFVLNS RLLWEEAENK PEWVKDFGSL NENEGVESPL
401: SLLKDPSMVE PLGSCGRQVL LWWLRVEARA DSKFPPGWII DPPLEITVAA KRTPWPDVPP EPPTKKKDQM PLSQGNTVVV IPKQQQHPTK IRKPKRKSKK
501: SKHEPRPTDT TTQVYSSSSK HQERN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)