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AT4G08810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.842
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calcium ion binding
Curator
Summary (TAIR10)
Calcium binding protein involved in cryptochrome and phytochrome coaction
Computational
Description (TAIR10)
SUB1; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 128 Blast hits to 128 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIU5eggNOG:ENOG410XTBIEMBL:AL161512EMBL:AL161813
EMBL:AY056392EMBL:BT002655EMBL:CP002687EnsemblPlants:AT4G08810
EnsemblPlants:AT4G08810.1entrez:826452GeneID:826452GO:GO:0005509
GO:GO:0005794GO:GO:0016021GO:GO:0016757GO:GO:0042175
Gramene:AT4G08810.1hmmpanther:PTHR31469hmmpanther:PTHR31469:SF4HOGENOM:HOG000238373
InterPro:IPR019378KEGG:ath:AT4G08810OMA:SWRFRNKPfam:PF10250
PhylomeDB:Q9LE45PIR:F85088Proteomes:UP000006548RefSeq:NP_192621.1
STRING:3702.AT4G08810.1TAIR:AT4G08810tair10-symbols:SUB1TMHMM:TMhelix
UniGene:At.26331UniProt:Q9LE45
Coordinates (TAIR10) chr4:-:5616204..5617862
Molecular Weight (calculated) 64195.00 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.59
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)