AT1G34550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF616) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2756 (EMB2756); INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT4G09630.1); Has 593 Blast hits to 590 proteins in 103 species: Archae - 14; Bacteria - 45; Metazoa - 74; Fungi - 32; Plants - 255; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12647088..12652646 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84113.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||
| Length | 735 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNVLAFLPD ELREKLIDEQ ETREKFQRLH SYVHALSTEV AMKRFYGALT TKEGISGSGV NATSDWGSYV TELSSLLEKS PKIERVLIDD DNAKMAQFRQ 101: SGTDRFSVRG NGGGASSDHV TIGIRNGVGG ATKGNNNRWR RSVRADKIRR LGIGSVVFVL CFVLLVTVLA YCYISGFTYN SYDDKGFVDS YEGDFLTNVT 201: RLDPSKVLEF GQGSVIHGRD SRYWDKDDRR RDDDYNEDEV KKDVQQVHNP VKGIGLYNEA GRNELKMYEA EYKATLGKGG HEKNNEGVDR DREDDDAIDS 301: HDGDEYVDSG HEDDNEEVHK EKVVHLVTKQ ENVDKDDGGV SKMSLGDSSL VSKGGKSGKT SRSDTKRRGR RRSSGSCEMK LLNSSQPIVE PLNTRKSARF 401: SLQYIEKEDK PDEEEQWEPR FAGHQSLQER EDSFVAQDKK IHCGFVKGPK GSSSTGFDLT EDDTNYISRC HIAVSSCIFG NSDRLRPPAN KMISRLSRKN 501: VCFIVFVDEI TMQTLSAEGH APDRAGFIGL WKLVVVKNLP YADMRRVGKI PKMLPHRLFP SARYSIWLDS KLRLQLDPLL ILEYFLWRKG HEYAISNHYD 601: RHCLWEEVAQ NKKLNKYNHT VINQQFQFYK ADGLTRFNAS DPFKLLPSNV PEGSFIVRAH TPMSNLFSCL WFNEVERFTP RDQLSFAYTY QKLRRMNPDK 701: PFNLHMFKDC ERRKIAKLFR HRSDEKRNLI QAAIQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)