AT2G41770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF288) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF288); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF288 (InterPro:IPR005049); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF288) (TAIR:AT3G57420.1); Has 196 Blast hits to 196 proteins in 30 species: Archae - 2; Bacteria - 9; Metazoa - 51; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17424549..17427042 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88067.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||
| Length | 771 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVQDRAAPS PAKPPKSQIR ELPTHQQIRR RFSEPKNLDF STWFSENLSR IAVFSLLIVT IVAFFFLYNT TDTASLLCFQ SQSTQFLQSL SRPQIKWNSI 101: PVVPDKTSPY ANFQTEKWIV VSVTKYPTEE LKSLVKIRGW QVLAIGNSAT PKDWSLKGSI FLSLDAQAEL GYRVLDHLPY DSFVRKSVGY LFAIQHGAKK 201: IYDADDRGEV IDGDLGKHFD VELVGLDSKQ EPILQYSHEN PNRTVVNPYI HFGQRSVWPR GLPLENVGEI NHEEYYTEVF GGKQFIQQGI SNGLPDVDSV 301: FYFTRKTTLE AFDIRFDEHS PKVALPQGVM VPVNSFNTLY HSSAFWGLML PVSVSSMASD VLRGYWGQRL LWELGGYVAV YPPTAHRFDR IEAYPFVEEK 401: DLHVNVGRLI KFLLAWRSEK HSFFETVLDL SFAMAEEGFW TEQDLKFTAA WLQDLIAVGY QQPRLMSLEL DRPRASIGHG DRKEFVPRKL PSVHLGVEET 501: GTVSTEIGNL IRWRKNFGNV VLVMFCNGPV ERTALEWRLL YGRIFKTVVI LSSQKNSDLY VEEAKLDHIY KHLPKIFDRY SSAEGFLFVE DDTVLNYWNL 601: LQADKSKIWT TDKVSKSWTS VKPTGNSDWF SVQAELVKKT VSTMPAHFQV NYKDATKNNH ETLTVCSSEV FYVPKRLVTD FIDLVDLVGD MDLHYKVAVP 701: MFFLSMDSPQ NFDPVLGSMV YKRKSASFNT SSSLYSAKAP AVHPWSISSE QDFIKLVQQM AEGDPLLMEL V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)