AT3G57420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.636 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF288) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF288); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF288 (InterPro:IPR005049); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF288) (TAIR:AT2G41770.1); Has 197 Blast hits to 197 proteins in 30 species: Archae - 2; Bacteria - 9; Metazoa - 50; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21252605..21255115 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87664.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 765 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVQDRVAPK PPKSRIRELP SRDRFAEPKI LDFSSWVSDN VYRIVIIFLF IVTVAAFFFL YNTTDTASLL CFQSQSTQSL QSLTRPQINW NSIQIVSDKT 101: SPYASFRTEK WIVVSVTKHP TEELKGLVKI KGWQVLAIGN SLTPKDWNLK GAIFLSLDAQ AELNYRILDH LPYDSFVRKS VGYLFAIQHG AKKIFDADDR 201: GEVIDGDLGK HFDVELVGED ARQEPILQYS HENPNRTVVN PYIHFGQRSV WPRGLPLENV GEINHEEYYT EVFGGKQFIQ QGISNGLPDV DSVYYSTRKT 301: TFEPFDIRFD EHSPKVALPQ GMMVPVNSFN TLYHSSAFWG LMLPVSVSSM ASDVIRGYWG QRLLWELGGY VAVYPPTVHR YDRVEAYPFS DEKDLHINVG 401: RLIKFLLAWR SNKHRFFETI LDLSFVMAEQ GFWTELDVKF TAAWLQDLLM VGYQQPRLMS LELDRPRATI GHGDRKEFVP RKLPSVHLGV EEIGTVSSEI 501: GNLIKWRKNF GNVVLIMFCN GPVERTALEW RLLYGRIFKT VVILSSRKNS DLYVQEAKLD HIYKRLPKIF DRYSSADGFV FVEDDTVLNY WNLLQADKTK 601: LWTTDKVTES WTTVRPAGNS DWYSVQAELV KKIVSTMPVH FQVNYKEATK NSDGTSLTMC SSEVFYVPKR FVSDFTDLVN LVGDMDLHYK VAVPMFFLSM 701: DSPQNFDPVL GSMVYKSEPA SLNSSLSLYS AEAPAVHPWS ISNEQDFIKL VREMAEGDPL LMELV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)