suba logo
AT5G57210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G29950.1); Has 1722 Blast hits to 1340 proteins in 214 species: Archae - 0; Bacteria - 4; Metazoa - 717; Fungi - 361; Plants - 287; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YX8ZeggNOG:KOG1091EMBL:AB019233EMBL:AY128297
EMBL:BT000636EMBL:CP002688EnsemblPlants:AT5G57210EnsemblPlants:AT5G57210.1
entrez:835827GeneID:835827Gramene:AT5G57210.1hmmpanther:PTHR22957
hmmpanther:PTHR22957:SF274HOGENOM:HOG000242002IntAct:Q9LVD7InterPro:IPR000195
KEGG:ath:AT5G57210KO:K18469ncoils:CoilOMA:YSAPNDS
Pfam:PF00566Pfscan:PS50086PhylomeDB:Q9LVD7PROSITE:PS50086
Proteomes:UP000006548RefSeq:NP_200531.1SMART:SM00164STRING:3702.AT5G57210.1
SUPFAM:SSF47923TAIR:AT5G57210UniGene:At.29344UniProt:Q9LVD7
Coordinates (TAIR10) chr5:-:23181088..23183705
Molecular Weight (calculated) 82869.60 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.60
Length 737 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIHEETQIS TTQDPPCTSN DASPPQDHRF EKLRGVRWRI NLGILPSSPS STIDELRRVT ADSRRRYAAL RRRLLIDPHL PKKGTNSPDL TIDNPLSQNP
101: DSTWGRFFRN AELEKTLDQD LSRLYPEHGS YFQSSGCQGM LRRILLLWCL KHPEIGYRQG MHELLAPLLY VLQVDVQYLT EVRSNYEDQF VDLFDELAFQ
201: ERDSGAYDFD IKKVLDDSME DEEEDGPPSG STKKKKPKSF DELDTETQTA VLLSDAYGGE GELGIVLSDK FMEHDAYTMF DALMYGGSSL GSVSVANFFI
301: YSAPNDSITG LPPVIEASGA LYHLLSLVDA SLHSHLVELG VEPQYFALRW LRVLFGREFP LSNLLIVWDE IFSADNSEVE RGVEADLGCE FRILSSPRGA
401: LVAGMAVSMI LYLRSSLLAT ENATSSLKKL LNFPEDIDLS KVIEKAKTLQ SLALEINARR DLIPKGPRKP MRGHSLSVDS ISLGSSPVGI EPESYWEEKW
501: RVLNSAEEEE RRKKALQRPK AGKKSWSERV KLRLSRTESD PSPAEAKRSG NKPHIRRSLL DDLSRQLGEK EIEPPEFPNP DTDIERSSTV SDTPSAEYED
601: NSSDKGKSEN HMDLPLSIPE NEPEAKSGMN IFRERKILSG KFQRLWRLGR NLSGEETSET KEAKQVDSED GKTDSDSTSG PGDSLKNTGR SMLEHIKVIE
701: SVLELSSPEN MTENGKLTVE EALRELRRLG NMLLSEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)