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AT5G09800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: CYS, MET, PRO, and GLY protein 2 (TAIR:AT5G64660.1); Has 1911 Blast hits to 1878 proteins in 97 species: Archae - 0; Bacteria - 16; Metazoa - 84; Fungi - 4; Plants - 1697; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-299-MONOMERBioGrid:16118EC:6.3.2.-eggNOG:ENOG410II27
eggNOG:ENOG410YF56EMBL:AB020752EMBL:AK175195EMBL:AK176549
EMBL:AL353994EMBL:BT010883EMBL:CP002688EnsemblPlants:AT5G09800
EnsemblPlants:AT5G09800.1entrez:830840Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:830840Genevisible:Q9LXE3GO:GO:0004842GO:GO:0010200
GO:GO:0016874Gramene:AT5G09800.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF20
HOGENOM:HOG000238505InParanoid:Q9LXE3IntAct:Q9LXE3InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT5G09800
OMA:GVEGCEAPaxDb:Q9LXE3Pfam:PF04564Pfam:Q9LXE3
Pfscan:PS51698PhylomeDB:Q9LXE3PIR:T49918PRIDE:Q9LXE3
PRO:PR:Q9LXE3PROSITE:PS51698ProteinModelPortal:Q9LXE3Proteomes:UP000006548
RefSeq:NP_196542.1SMART:SM00504SMR:Q9LXE3STRING:3702.AT5G09800.1
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT5G09800UniGene:At.32456
UniPathway:UPA00143UniProt:Q9LXE3
Coordinates (TAIR10) chr5:-:3043123..3044352
Molecular Weight (calculated) 45777.80 Da
IEP (calculated) 8.00
GRAVY (calculated) 0.03
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI
101: NAAIERFRIE NDARSKILRF ARESDENREF LAGKDDFVAM LVDLISDSRN FSDSQLLLVG EAVKILSMIR RKIFDRRRLS NLILTNGGDC LTSFFLLIKR
201: GNPKLKIDCS AVLEFIAVDA ESKLIIAKGE GLVTEIIKLI SSDSDSSLIE ANLSLLIAIA SSKRVKLALI REKLVTKLTS LLTDPTTSVS VTEKCLKLLE
301: AISSCKEGRS EICDGVCVET VVNKLMKVST AATEHAVTVL WSVCYLFKEK KAQDAVIRIN GVTKILLLLQ SNCSLTVRHM LTDLLKVFKV NSRSCLSVYE
401: TKTTHIMPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)