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AT3G55730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 109
Curator
Summary (TAIR10)
putative transcription factor MYB109 (MYB109) mRNA,
Computational
Description (TAIR10)
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF262734EMBL:AL161667
EMBL:AY136325EMBL:BT000092EMBL:CP002686EnsemblPlants:AT3G55730
EnsemblPlants:AT3G55730.1entrez:824739Gene3D:1.10.10.60GeneID:824739
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006355GO:GO:0009651GO:GO:0009723GO:GO:0009733
GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753
Gramene:AT3G55730.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF511InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G55730KO:K09422
OMA:PCEGPLIPfam:PF00249Pfscan:PS51294PhylomeDB:Q9LDW5
PIR:T47712PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_191132.1
SMART:SM00717SMR:Q9LDW5STRING:3702.AT3G55730.1SUPFAM:SSF46689
TAIR:AT3G55730tair10-symbols:AtMYB109tair10-symbols:MYB109UniGene:At.1704
UniProt:Q9LDW5
Coordinates (TAIR10) chr3:-:20682114..20683963
Molecular Weight (calculated) 43538.90 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.62
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)