AT3G60680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF641) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT2G45260.1); Has 309 Blast hits to 304 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 2; Plants - 284; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:22430246..22431745 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56273.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MREVETTAIT AAPPQFSQMF QKLAMAVKTK TYEFFTEDDN ERTDAEGFSL LDSSEDFITD QKVVVLKPDK PLLSASSPGS PIESPVNDVQ TKNLGVVSVV 101: KPNQKKLSQV RKLDTQMGLS LISSVFATAS SFEASYLQLQ AAHAPFVEEN VKAADRALVS NLQKLSDLKQ FYRNYRQSLD FESDLAIGSC LESRVQENQS 201: KLRALETVSN RLQAEMDAKD LQVWSLRNKL GEIQKSTSKL SKRLSSNSSL DVLLSVRVFE SLLYDAFKAT QKFTKILIEL MEKAGWDLDL VAKSVHPEVD 301: YAKERHNRYA LLSYVCLGMF RGFDGEGFDL NENDYEESER SSVDSSLREL MQHVSSNPME LLDRDKDCAF SRFCDKKYHE LIHPNMASSI FSNMDENEAV 401: LSSWRSLSTF YESFVTMASS IWTLHKLALS FDPAVEIFQV ESGVEFSIVF MENVLKRKQD KKFSMSPTRA KVGFTVVPGF KIGCTVIQCQ VYLTGGSKM |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)