AT2G20010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF810) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G25800.1); Has 170 Blast hits to 161 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8637977..8640830 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94030.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 834 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRISEQIDSR IRRALLRIAS GQLGRRVEMM VLPLELLQQL KASDFPDQEE YESWQRRNLK LLEAGLILYP CVPLSKSDKS VQQLKQIIRS GLERPLDTGK 101: ITGETQNLRS LVMSLASRQN NNGIGSETCH WADGFPLNLR IYQMLLESCF DVNDELLIVE EVDEVLELIK KTWPVLGINQ MIHNVCFLWV LVNRYVSTGQ 201: VENDLLVAAH NLILEIENDA METNDPEYSK ILSSVLSLVM DWGEKRLLAY HDTFNIDNVE TLETTVSLGI LVAKVLGEDI SSEYRRKKKH VDSGRDRVDT 301: YIRSSLRMAF QQTKRMVEHS KKSKSRQSTN NLPALAILAE DIGHLAFNEK AIFSPILKNW HPLAAGVAAA TLHSCYGTEL KKFVSGITEL TPDAIRVLTA 401: ADKLEKDLVQ IAVQDAVDSE DGGKSVIREM PPFEAEVVIG NLVKSWIKIR VDRLKEWIDR NLQQEVWNPR SNKLGIAPSA VDVLRMVDET LEAFFLLPIL 501: LHPVLLPELT SGLDKCMQHY VSKAKSSCGS RNTFLPVLPA LTRCTVGSRL HGVFKKKEKP MVASHRRKSQ LGTGNDSAEI LQFCCRINTL QYIRTEIESS 601: GRKTLNRLPE SEVAALDAKG KIFEQSISYC SKGIQQLSEA TAYKIVFHDL SNVLWDGLYL GEVPSSRIEP FLQELERCLE IISSSVHDRV RTRVISDIMR 701: ASFDGFLLVL LAGGPSRGFT IQDSAAVEED FKFLCDLFWS NGDGLPLDLI EKVSTTVKSI LPLLRTDTDS LIERFKAVCL ENHGSDRGKL PLPPTSGPWS 801: PTEPNTLLRV LCYRYDEPAT KFLKKTYNLP RKLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)