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AT4G25230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.745
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RPM1 interacting protein 2
Curator
Summary (TAIR10)
RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.
Computational
Description (TAIR10)
RPM1 interacting protein 2 (RIN2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 3 (TAIR:AT5G51450.1); Has 2005 Blast hits to 1973 proteins in 236 species: Archae - 0; Bacteria - 2; Metazoa - 699; Fungi - 246; Plants - 674; Viruses - 9; Other Eukaryotes - 375 (source: NCBI BLink).
Protein Annotations
BioGrid:13913EC:6.3.2.-eggNOG:COG5243eggNOG:KOG0802
EMBL:AL035396EMBL:AL161563EMBL:AY072178EMBL:CP002687
EMBL:DQ677669EnsemblPlants:AT4G25230EnsemblPlants:AT4G25230.1EnsemblPlants:AT4G25230.2
entrez:828626Gene3D:3.30.40.10GeneID:828626Genevisible:Q8VYC8
GO:GO:0000209GO:GO:0004842GO:GO:0005886GO:GO:0008270
GO:GO:0009626GO:GO:0016021GO:GO:0016874GO:GO:0034052
GO:GO:0042787GO:GO:0043161GO:GO:0061630Gramene:AT4G25230.1
Gramene:AT4G25230.2hmmpanther:PTHR22763hmmpanther:PTHR22763:SF51HOGENOM:HOG000029409
InParanoid:Q8VYC8InterPro:IPR001841InterPro:IPR003892InterPro:IPR013083
KEGG:ath:AT4G25230KO:K10636OMA:ENDTSRNPaxDb:Q8VYC8
Pfam:PF02845Pfam:PF13639Pfam:Q8VYC8Pfscan:PS50089
Pfscan:PS51140PhylomeDB:Q8VYC8PRIDE:Q8VYC8PRO:PR:Q8VYC8
PROSITE:PS50089PROSITE:PS51140ProteinModelPortal:Q8VYC8Proteomes:UP000006548
RefSeq:NP_194253.2RefSeq:NP_849552.1SMART:SM00184SMR:Q8VYC8
STRING:3702.AT4G25230.1SUPFAM:SSF57850SUPFAM:SSF88633TAIR:AT4G25230
tair10-symbols:RIN2TMHMM:TMhelixUniGene:At.43259UniPathway:UPA00143
UniProt:Q8VYC8
Coordinates (TAIR10) chr4:+:12924446..12928671
Molecular Weight (calculated) 64567.60 Da
IEP (calculated) 6.79
GRAVY (calculated) 0.20
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIKYLPVSV ASTALSFVGL QVWTELSLDR LRADGLIAKN ISLGDSEHAL ELLLGSYFTI ALLTNFVLNV YILLVLSLKT LFFGDLYDVE TKKLVERLAN
101: YIIYKGTFLP LVIPPTIFQG VLWTVWLTVL CTLKMFQALA RDRLERLNAS PSSTPWTYFR VYSVLFLVLS VDMFWIKLSL MTYNTIGSAV YLLLLFEPCS
201: IAFETLQALL IHGFQLLDMW INHLAVKNSD CQRSKFIDSM TAGSLLEWKG LLNRNLGFFL DMATLVMALG HYLHIWWLHG IAFHLVDAVL FLNIRALLSA
301: ILKRIKGYIK LRIALGALHA ALPDATSEEL RAYDDECAIC REPMAKAKRL HCNHLFHLGC LRSWLDQGLN EVYSCPTCRK PLFVGRTENE VNPRTVEVSS
401: DEQLARQLER QNNPVHALAT GLFPAEVPDS VENDTSRNLG LDPSWLQTWS SQGSDVAGPS TTSRTVGLGR VQMMMRHLAS VGESYAQTAL DDAAWSLWPM
501: NPSQASTSST TVPPGNGGRT GGLHLRTVSN TTNESLTNIL AMAETVREVM PHVPDEIIFQ DLQRTNSVAV TVNNLLQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)