AT3G59660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.512 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : C2 domain-containing protein / GRAM domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
C2 domain-containing protein / GRAM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT1G03370.1); Has 2988 Blast hits to 2683 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1633; Fungi - 370; Plants - 725; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:22034426..22038484 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66071.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 594 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQSAVEVLL PSAWEIEVAV VASVFLIASY WLFAYRGGGD DDVVGVGFDR SRLMQNLDSG DAFDKDKIGH LRGDTQTNAA YIVKVELLAA KNLIGANLNG 101: TSDPYAIVNC GSEKRFSSMV PGSRNPMWGE EFNFPTDELP AKINVTIHDW DIIWKSTVLG SVTINVEREG QTGPVWHSLD SPSGQVCLNI NAIKLPVNAP 201: RAVTGYAGAG RRRVTLDQQG PTIVHQKPGP LQTIFDLLPD EVVEHSYSCA LERSFLYHGR MYVSAWHICF HSNVFSKQMK VVVPLGDIDE IRRSQHALIN 301: PAITIILRMG AGGHGVPPLG TPDGRVRYKF ASFWNRNHTL KALQRAVNNY HAMLEVEKKE RAQSALRAHS SSVKGGGKVQ VKAPEDTAAV PVKFQAFIKE 401: EVLVNIYNDV FASTPEQVLN VLLADDSTYT NEYRSARKDK NLNIEPWHTA EEYDGQVREI KFRSICNSPM CPPDTAVTEW QHVVLSPDKK VLVFETVQQP 501: HDVPFGSYFE VHCRWRLEAK DETSSVIDIR VGVHFKKWCL MQSKIKAGAI DEYKKEVEVM LEVALSYLKS HSSSSSHGDI DKSALSSPTP ENIS |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)