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AT4G12250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.864
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucuronate 4-epimerase 5
Curator
Summary (TAIR10)
UDP-D-glucuronate 4-epimerase
Computational
Description (TAIR10)
UDP-D-glucuronate 4-epimerase 5 (GAE5); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 40243 Blast hits to 40231 proteins in 2957 species: Archae - 760; Bacteria - 24181; Metazoa - 696; Fungi - 354; Plants - 1138; Viruses - 37; Other Eukaryotes - 13077 (source: NCBI BLink).
Protein Annotations
BioGrid:12131BRENDA:5.1.3.6EC:5.1.3.6eggNOG:COG0451
eggNOG:ENOG410IU3FEMBL:AL080318EMBL:AL161533EMBL:AY050993
EMBL:AY150403EMBL:CP002687EnsemblPlants:AT4G12250EnsemblPlants:AT4G12250.1
entrez:826833Gene3D:3.40.50.720GeneID:826833Genevisible:Q9STI6
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005975
GO:GO:0016021GO:GO:0032580GO:GO:0050378GO:GO:0050662
Gramene:AT4G12250.1gramene_pathway:5.1.3.6gramene_pathway:PWY-4861hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF319HOGENOM:HOG000168000InParanoid:Q9STI6InterPro:IPR001509
InterPro:IPR008089InterPro:IPR016040KEGG:ath:AT4G12250KO:K08679
OMA:MAYTYHYPaxDb:Q9STI6Pfam:PF01370Pfam:Q9STI6
PhylomeDB:Q9STI6PIR:T48135PRIDE:Q9STI6PRINTS:PR01713
PRO:PR:Q9STI6ProteinModelPortal:Q9STI6Proteomes:UP000006548RefSeq:NP_192962.1
SMR:Q9STI6STRING:3702.AT4G12250.1SUPFAM:SSF51735TAIR:AT4G12250
tair10-symbols:GAE5TMHMM:TMhelixUniGene:At.48849UniGene:At.66589
UniProt:Q9STI6
Coordinates (TAIR10) chr4:-:7289538..7290848
Molecular Weight (calculated) 48167.30 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.22
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHLDDLPST PGKYKTDKVP PYGILHHHRY LRLSKLTLWA SLFLALFLFY LVLSPPPSPS RRNLNDSSSI SAAKYGGSHW EKQVRKSARP RSHGGLTVLV
101: TGASGFVGTH VSIALRRRGD GVLGLDNFNR YYDPKLKRAR QGLLERSGVF VVEGDINDAV LLRKLFDVVL FTHVMHLAAQ AGVRYAMQNP GSYVNSNIAG
201: FVNLLEVSKS ANPQPAIVWA SSSSVYGLNS KVPFSEKDRT DQPASLYAAT KKAGEGIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTKDILKGKT
301: ITVFESPDKG SVARDFTYID DIVKGCLGAL DTAEKSTGSG GKKKGPAMFR IYNLGNTSPV PVTKLVTILE KLLKMKAKKK IMPLPRNGDV EFTHANITLA
401: QAELGYKPAV DLETGLKKFV KWYMGFYTGS KKKSSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)