suba logo
AT3G10980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 166 Blast hits to 162 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJFYeggNOG:ENOG410ZU39EMBL:AY062465EMBL:BT000119
EMBL:CP002686EnsemblPlants:AT3G10980EnsemblPlants:AT3G10980.1entrez:820269
GeneID:820269GO:GO:0005886GO:GO:0016021Gramene:AT3G10980.1
hmmpanther:PTHR31045hmmpanther:PTHR31045:SF4HOGENOM:HOG000238418InterPro:IPR006461
InterPro:IPR021369KEGG:ath:AT3G10980OMA:QHPRRFYPfam:PF04749
Pfam:PF11204PhylomeDB:Q8W4N1Proteomes:UP000006548RefSeq:NP_187709.5
TAIR:AT3G10980TIGRfam:TIGR01571TIGRFAMs:TIGR01571TMHMM:TMhelix
UniGene:At.63533UniProt:Q8W4N1
Coordinates (TAIR10) chr3:+:3438810..3440501
Molecular Weight (calculated) 63237.20 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.14
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)