AT3G50340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18665333..18666544 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44305.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDVDRRMTG LRPAHAAGLR RLSARAAAPT TPTVRNSLVS FSSLADQVIS HLHTSRIQVQ PGLTDSEFAR AEAEFAFAFP PDLRAVLTAG LPVGAGFPDW 101: RSPGARLHLR AMIDLPIAAV SFQIARNTLW SKSWGLRPSD PEKALRVARN ALKRAPLMIP IFDHCYIPCN PSLAGNPVFY IDETRIFCCG SDLSDFFERE 201: SVFRGSDTCP VVLTKQRSVS EKSAGSSSSS SSNFSRMSLD SGRVHGSSTP RWVEFWSDAA VDRRRRNSAS SMSSSHSSSP ERYLDLPRSE TPKWVDDYVN 301: RIGSVLRGGG WSESDVDDIV HVSASGFFEG EMVILDNQAV LDALLLKAGR FSESLRKAGW SSEEVSDALG FDFRPEKEKK PVKKLSPELV QRIGKLAESV 401: SRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)