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AT3G27010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20
Curator
Summary (TAIR10)
Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes.
Computational
Description (TAIR10)
TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (TCP20); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G41030.1); Has 543 Blast hits to 539 proteins in 120 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:7648eggNOG:ENOG410IXGUeggNOG:ENOG410YH53EMBL:AB026649
EMBL:AJ291749EMBL:AK118178EMBL:BT006043EMBL:CP002686
EnsemblPlants:AT3G27010EnsemblPlants:AT3G27010.1entrez:822318GeneID:822318
Genevisible:Q9LSD5GO:GO:0000987GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009653GO:GO:0043565Gramene:AT3G27010.1
hmmpanther:PTHR31072hmmpanther:PTHR31072:SF4HOGENOM:HOG000070851InParanoid:Q9LSD5
IntAct:Q9LSD5InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT3G27010
OMA:GLMISHDPaxDb:Q9LSD5Pfam:PF03634Pfam:Q9LSD5
Pfscan:PS51369PhylomeDB:Q9LSD5PRIDE:Q9LSD5PRO:PR:Q9LSD5
PROSITE:PS51369ProteinModelPortal:Q9LSD5Proteomes:UP000006548RefSeq:NP_189337.1
STRING:3702.AT3G27010.1TAIR:AT3G27010tair10-symbols:AT-TCP20tair10-symbols:ATTCP20
tair10-symbols:PCF1tair10-symbols:TCP20UniGene:At.25359UniGene:At.67235
UniProt:Q9LSD5
Coordinates (TAIR10) chr3:-:9957810..9958754
Molecular Weight (calculated) 33392.90 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.67
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)